PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.001G503100.1.p
Common NameSb01g047000, SORBIDRAFT_01g047000
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family LBD
Protein Properties Length: 169aa    MW: 17610.8 Da    PI: 6.7246
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.001G503100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260121.83.6e-38161161100
                DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 
                           +C aCk+lrrkCa++Cv+ap+f+ae+ +++fa++hk+FGasn  kll+++p+ +r++a+++++yeA+ar+rdP+yG+v++i++lqqq++
  Sobic.001G503100.1.p  16 PCGACKFLRRKCAAECVFAPHFCAEDgAAQFAAIHKVFGASNAAKLLQQVPPADRSEAAATVTYEAQARLRDPIYGCVAHIFALQQQVA 104
                           7***********************9989************************************************************* PP

                DUF260  89 qlkaelallkee 100
                           +l+ ++ ++k++
  Sobic.001G503100.1.p 105 SLQMQVLQAKAQ 116
                           ****99888776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.83815117IPR004883Lateral organ boundaries, LOB
PfamPF031952.2E-3716113IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 169 aa     Download sequence    Send to blast
MASSGTSGGG GSPGSPCGAC KFLRRKCAAE CVFAPHFCAE DGAAQFAAIH KVFGASNAAK  60
LLQQVPPADR SEAAATVTYE AQARLRDPIY GCVAHIFALQ QQVASLQMQV LQAKAQVAQT  120
MAAAGPQGTN PLLQRWPLEP ESLSTQSSGC YSDMYCGFGD QEEGSYTR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF0517340.0EF051734.1 Zea mays RTCN mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002468500.11e-121hypothetical protein SORBIDRAFT_01g047000
SwissprotQ9SLB74e-56LBD16_ARATH; LOB domain-containing protein 16
TrEMBLC5WXX11e-121C5WXX1_SORBI; Putative uncharacterized protein Sb01g047000
STRINGSb01g047000.11e-120(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP102623344
Representative plantOGRP40515100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58190.14e-45lateral organ boundaries-domain 29